Package net.simplace.usermodules.heidi.modules.LINTULCC

Class LintulCC_base

java.lang.Object

net.simplace.sim.model.FWSimComponent

net.simplace.usermodules.heidi.modules.LINTULCC.LintulCC_base

All Implemented Interfaces:

net.simplace.sim.util.FWSimFieldContainer

public class LintulCC_base
extends net.simplace.sim.model.FWSimComponent

LintulCC - Calculates Biomass by photosynthesis.

** Module is under development! Please notice that unit's and default values for some values are wrong! **

Author:

G. Krauss

Component Variables

Content Type	Name	Description	Data Type	Unit	Min Value	Max Value	Default Value
constant	cA	Parameter in the Angtrom formular	DOUBLE		-	-	1.35
constant	cB	Parameter in the Angtrom formular	DOUBLE		-	-	-0.35
constant	cCO2A	Atmospheric CO2 concentration	DOUBLE	micromol m-2 s-1	-	-	0.0
constant	cEAKMC	Energy activation for KMC	DOUBLE	J mol-1	-	-	79430.0
constant	cEAKMO	Energy activation for KMO	DOUBLE	J mol-1	-	-	36380.0
constant	cEAVCMX	Energy activation for VCMX	DOUBLE	J mol-1	-	-	65330.0
constant	cGFDUR	-	DOUBLE		-	-	-
constant	cILAI	Initial value of LAI	DOUBLE	m 2 leaf m-2 ground	-	-	0.0
constant	cILPN	Initial value of LPN	DOUBLE		-	-	0.0
constant	cIRRIG	Irrigation switch (1 irrigation on)	BOOLEAN		-	-	false
constant	cIWLVG	Initial value of dry weight of green leaf	DOUBLE	kg ha-1	-	-	0.0
constant	cIWRT	Initial value of dry weight of root	DOUBLE	kg ha-1	-	-	0.0
constant	cIWSO	Initial value of dry weight of organ	DOUBLE	kg ha-1	-	-	0.0
constant	cIWST	Initial value of dry weight of stem	DOUBLE	kg ha-1	-	-	0.0
constant	cJMUMOL	Conversion energy from radiation to mole photon	DOUBLE	mol photons MJ-1	-	-	4.56
constant	cKC25	CO2 turnover rate of Robisco at 25°C	DOUBLE	g CO2 g-1 Robisco d-1	-	-	2.0
constant	cKDF	Extinction coefficient of leaf for diffuse flux	DOUBLE	m2ground ha-1 leaf	-	-	-
constant	cKMC25	Michaelis-Menten constant for CO2 at temperature 25°C	DOUBLE	micromol mol-1	-	-	404.9
constant	cKMO25	Michaelis-Menten constant for O2 at temperature 25°C	DOUBLE	mmol mol-2	-	-	278.4
constant	cLAICR	Critial LAI	DOUBLE	m2 m-2	-	-	4.0
constant	cLAT	Latitude of the weather station	DOUBLE	degrees	-	-	0.0
constant	cMAINLV	Maintenance respiration coefficient of leaves	DOUBLE	g CH2O g-1 DM d-1	-	-	-
constant	cMAINRT	Maintenance respiration coefficient of root	DOUBLE	g CH2O g-1 DM d-1	-	-	-
constant	cMAINSO	Maintenance respiration coefficient of organ	DOUBLE	g CH2O g-1 DM d-1	-	-	-
constant	cMAINST	Maintenance respiration coefficient of stems	DOUBLE	g CH2O g-1 DM d-1	-	-	-
constant	cMODDTR	Factor to modify daily solar radiation	DOUBLE		-	-	1.0
constant	cMODTMP	Temperature increment to modify daily temperature	DOUBLE	°C	-	-	0.0
constant	cO2	Atmospheric O2 concentration	DOUBLE	micromol CO2 m-2 s-1	-	-	0.0
constant	cPCLTB	Fraction table for leaves	DOUBLEARRAY		-	-	0.0 0.325 100.0 0.325 265.0 0.48 670.0 0.48
constant	cPCRTB	Fraction table for roots	DOUBLEARRAY		-	-	0.0 0.5 100.0 0.5 265.0 0.35 670.0 0.35
constant	cPOTGGR	-	DOUBLE		-	-	-
constant	cPsiC	Psychromatic instrument constant	DOUBLE	kPa °C-1	-	-	0.066
constant	cQ10	Factor acounting for increase in maintance respiration with a 10°C rise temperature	DOUBLE	_	-	-	-
constant	cRGRL	Relative growth rate of leaf area during exponential growth	DOUBLE	(°Cd)-1	-	-	-
constant	cRbound	boundary layer	DOUBLE	s m-1	-	-	7.0
constant	cRoCp	Volumetric heat capacity	DOUBLE	MJ/m3 C	-	-	0.0012
constant	cSAINTC	Switch for rain interception calculation (0 no intercept, 1 intercept)	DOUBLE		-	-	0.0
constant	cSCP	Scattering coefficients of leaf for PAR	DOUBLE	_	-	-	0.2
constant	cSRNOFF	Switch for runoff calculation (0 no runoff, 1 runoff)	DOUBLE		-	-	0.0
constant	cTBASE	Base temperature	DOUBLE	°C	-	-	0.0
constant	cTKL	Thickness of the soil layers	DOUBLEARRAY	mm	-	-	-
constant	cTMPTB	Table for heatstress factor	DOUBLEARRAY		-	-	0.0 0.5 8.0 0.5 10.0 1.0 29.0 1.0 35.0 0.5 40.0 0.0
constant	cTSUMEM	TSUM needed for emergence	DOUBLE	degree day	-	-	50.0
constant	cTTSSE	Temperature sum to emergence?	DOUBLE	°C day	-	-	-
constant	cWCAD	Volumetric water content in each soil layer at dry air	DOUBLEARRAY	cm3 cm-3	-	-	-
constant	cWCFC	Volumetric water content at field capacity in each soil layer	DOUBLEARRAY	cm3 cm-4	-	-	-
constant	cWCLI	Initial value of water content in each layer WCL	DOUBLEARRAY	cm3 cm-3	-	-	-
constant	cWCST	Volumetric water content at saturation in each soil layer	DOUBLEARRAY	cm3 cm-3	-	-	-
constant	cWCWP	Volumetric water content at wilting point in each soil layer	DOUBLEARRAY	cm3 cm-3	-	-	-
input	iDoHarvest	harvesting	BOOLEAN	1	-	-	false
input	iRAIN	Daily precipitation	DOUBLE	mm d-1	-	-	0.0
input	iRDD	Daily global radiation	DOUBLE	J m-2 d-1	-	-	0.0
input	iTMMN	Daily minimum temperature	DOUBLE	°C	-	-	0.0
input	iTMMX	Daily maximum temperature	DOUBLE	°C	-	-	0.0
input	iVP	Actual vapour pressure	DOUBLE	Kpa	-	-	0.0
input	iWN	Wind speed	DOUBLE	m s-1	-	-	-
state	DOYEM	Day of year of crop emergence	INT	d	-	-	0
state	sCAEVAP	Total actual evapotranspiration	DOUBLE	mm	-	-	0.0
state	sCAINTC	Actual amount of precipitation intercepted by the canopy	DOUBLE	mm	-	-	0.0
state	sCDRAIN	Total drainage	DOUBLE	mm	-	-	0.0
state	sCRNOFF	Total water runoff	DOUBLE	mm	-	-	0.0
state	sCRRAIN	Total precipitation	DOUBLE	mm	-	1000.0	0.0
state	sCTRANS	Total transpiration	DOUBLE	mm	-	-	0.0
state	sLAI	Leaf area index	DOUBLE	m2 m-2	-	-	0.0
state	sMSLN	-	DOUBLE		-	-	0.0
state	sMSLPN	-	DOUBLE		-	-	0.0
state	sPARSUM	Photosynthesis active radiation sum	DOUBLE	J m-2	-	-	0.0
state	sTSUM	Thermal time degree	DOUBLE	°Cd	-	-	0.0
state	sWLVG	Dry weight of green leaf	DOUBLE	kg ha-1	-	-	0.0
state	sWRT	Dry weight of root	DOUBLE	kg ha-1	-	-	0.0
state	sWSO	Dry weight of organ	DOUBLE	kg ha-1	-	-	0.0
state	sWST	Dry weight of stem	DOUBLE	kg ha-1	-	-	0.0
rate	rAEVAP	Actual soil evaporation rate derived from Penman evaporation	DOUBLE	mm d-1	-	-	0.0
rate	rAINTC	Daily precipitation intercepted by the canopy	DOUBLE	mm d-1	-	-	0.0
rate	rATRANS	Daily actual transpiration	DOUBLE	mm d-1	-	-	0.0
rate	rDRAIN	Drainage rate below the root zone	DOUBLE	mm d-1	-	-	0.0
rate	rPAR	Instantaneous flux of photosynthesis active radiation	DOUBLE	J m-2 ground s-1	-	-	0.0
rate	rRLAI	Daily change of LAI	DOUBLE	m 2 leaf m-2 ground d-1	-	-	0.0
rate	rRLE	Rate change of	DOUBLE		-	-	0.0
rate	rRLPI	Rate change of	DOUBLE		-	-	0.0
rate	rRNOFF	Daily runoff	DOUBLE	mm d-1	-	-	0.0
rate	rRRAIN	Daily precipitation	DOUBLE	mm d-1	-	-	0.0
rate	rRTSUM	Rate change of thermal time degree	DOUBLE	°Cd	-	-	0.0
rate	rRWLVG	Daily change of dry weight of leaf /Dry matter growth rate of leaf	DOUBLE	kg ha-1 d-1	-	-	0.0
rate	rRWRT	Daily change of dry weight of root /Dry matter growth rate of root	DOUBLE	kg ha-1 d-1	-	-	0.0
rate	rRWSO	Daily change of dry weight of organ /Dry matter growth rate of organ	DOUBLE	kg ha-1 d-1	-	-	0.0
rate	rRWST	Daily change of dry weight of stem /Dry matter growth rate of stem	DOUBLE	kg ha-1 d-1	-	-	0.0
out	ALB	Albedo, reflection coefficient for short-ware radiation	DOUBLE		-	-	0.0
out	ALBS	Albedo, reflection coefficient for soil surface	DOUBLE		-	-	0.0
out	AMAXshade	Light saturated leaf photosynthetic of shaded leaf	DOUBLE	g CO2 m-2 s-1	-	-	0.0
out	AMAXsun	Light saturated leaf photosynthetic of sunlit leaf	DOUBLE	g CO2 m-2 s-1	-	-	0.0
out	AWPAW	-	DOUBLE		-	-	0.0
out	BBRAD	Black body radiation	DOUBLE	J m-2 s-1	-	-	0.0
out	CATRANS	-	DOUBLE		-	-	0.0
out	CDSF1	Cummulative stress factor	DOUBLE		-	-	0.0
out	CO2Ishade	CO2 concentration of shaded leaf	DOUBLE	?mol CO2 m-2 s-1	-	-	0.0
out	CO2Isun	CO2 concentration of sunlit leaf	DOUBLE	?mol CO2 m-2 s-1	-	-	0.0
out	CROPHT	Crop height	DOUBLE		-	-	0.0
out	CROPlimit	-	DOUBLE		-	-	0.0
out	CUMREMOB	-	DOUBLE		-	-	0.0
out	DAE	Day after emergency	INT	d	-	-	0
out	DANTH	-	INT		-	-	0
out	DAVTMP	Daily average temperature	DOUBLE	°C	-	-	0.0
out	DFGROshade	-	DOUBLE		-	-	0.0
out	DFGROsun	-	DOUBLE		-	-	0.0
out	DLAI	Death rate of leaf area	DOUBLE	m 2 leaf m-2 ground d-1	-	-	0.0
out	DLEAVES	-	DOUBLE		-	-	0.0
out	DLV	Death rate of leaf	DOUBLE	g leaf m-2 ground d-1	-	-	0.0
out	DRScropH2O	-	DOUBLE		-	-	0.0
out	DSF1	Stress factor	DOUBLE		-	-	0.0
out	DTEFF	Daily effective temperature	DOUBLE	°C	-	-	0.0
out	DTGA	Daily total gross CO2 asimilation of the crop	DOUBLE	g CO2 m-2 ground d-1	-	-	0.0
out	DTR	Daily solar radiation =RDD*MODDRT	DOUBLE	J m-2 d-1	-	-	0.0
out	DVSFAC	-	DOUBLE		-	-	0.0
out	DgsCO2	-	DOUBLE		-	-	0.0
out	EFFshade	Quantum yield of shaded leaf	DOUBLE	g CO2 MJ-1	-	-	0.0
out	EFFsun	Quantum yield of sunlit leaf	DOUBLE	g CO2 MJ-1	-	-	0.0
out	EMERG	Parameter to indicate the emergency	INT		-	-	0
out	ET0	-	DOUBLE		-	-	0.0
out	ETD	-	DOUBLE		-	-	0.0
out	ETR	-	DOUBLE		-	-	0.0
out	FCLEAR	Sky clearness function in calculation of net long-wave radiation	DOUBLE		-	-	0.0
out	FLOW	has flowered	BOOLEAN	1	-	-	false
out	FSLLA	Fration of sunlit leaf area	DOUBLE	_	-	-	0.0
out	GLAI	Net growth rate of leaf area index	DOUBLE	m-2 leaf m-2 ground d-1	-	-	0.0
out	GLV	Dry matter of growth rate of leaves	DOUBLE	g DM m-2 ground d-1	-	-	0.0
out	GRAINN	-	DOUBLE		-	-	0.0
out	GSshadeH2O	Stomatal resistance shaded leaf to H2O	DOUBLE		-	-	0.0
out	GSsunH2O	Stomatal resistance sunlit leaf to H2O	DOUBLE	m s-1	-	-	0.0
out	GTOTAL	Daily total gross CH2O assimilation of the crop	DOUBLE	g CH2O m-2 ground d-1	-	-	0.0
out	INTRAD	-	DOUBLE		-	-	0.0
out	IsAnthesis	true if Anthesis date	BOOLEAN	1	-	-	false
out	IsMaturity	true if maturity date	BOOLEAN	1	-	-	false
out	LAIANTH	-	DOUBLE		-	-	0.0
out	LAYERRT	roots per layer	DOUBLEARRAY		-	-	-
out	MAINT	-	DOUBLE		-	-	0.0
out	MAINTS	-	DOUBLE		-	-	0.0
out	MATURITY	is mature	BOOLEAN	1	-	-	false
out	NNR	days after last rain	DOUBLE	d	-	-	0.0
out	ONRAD	-	DOUBLE		-	-	0.0
out	ORLOSS	-	DOUBLE		-	-	0.0
out	PARINT	-	DOUBLE		-	-	0.0
out	PAW	-	DOUBLEARRAY		-	-	-
out	PCEDW	partitioning fraction to storage organs?	DOUBLE		-	-	0.0
out	PCLDW	partitioning fraction to leaves?	DOUBLE		-	-	0.0
out	PCRDW	partitioning fraction to roots?	DOUBLE		-	-	0.0
out	PCSDW	partitioning fraction to stems?	DOUBLE		-	-	0.0
out	PHEADW	Weight of shoot at emergence and anthesis	DOUBLEARRAY	kg ha-1	-	-	-
out	PHEDAE	days of emergence and anthesis	INTARRAY		-	-	0 0 0
out	PHOTMP	-	DOUBLE		-	-	0.0
out	PHY	Phylochron	DOUBLE		-	-	0.0
out	PRWSO	-	DOUBLE		-	-	0.0
out	PTRANS	Potential transpiration rate derived form Penman-Monteith	DOUBLE	mm d-1	-	-	0.0
out	RCPHOE	-	DOUBLE		-	-	0.0
out	RDRSH	Relative death rate due to self-shading at high LAI	DOUBLE	d-1	-	-	-
out	REMOB	-	DOUBLE		-	-	0.0
out	RLAYER	deepest layer nr with root	INT		-	-	0
out	RLV	-	DOUBLEARRAY		-	-	-
out	RNS	-	DOUBLE		-	-	0.0
out	ROOTlimit	-	DOUBLE		-	-	0.0
out	RRATIO	-	DOUBLE		-	-	0.0
out	RSINK	-	DOUBLE		-	-	0.0
out	RUE	-	DOUBLE		-	-	0.0
out	SDWANT	-	DOUBLE		-	-	0.0
out	SLA	Specific leaf area	DOUBLE	m-2 leaf g-1 leaf	-	-	0.0
out	SOILlimit	-	DOUBLE		-	-	0.0
out	STRESS	-	DOUBLE		-	-	0.0
out	SVAP	-	DOUBLE		-	-	0.0
out	SWITCH	phenology stage	INT		-	-	0
out	TAEVAP	Cumulative actual soil evaporation	DOUBLE	mm	-	-	0.0
out	TDW	-	DOUBLE		-	-	0.0
out	TEFF	-	DOUBLE		-	-	0.0
out	TFAC	Temperature factor	DOUBLE		-	-	0.0
out	TPAW	-	DOUBLE		-	-	0.0
out	TPVAP	Cumulative potential soil evaporation	DOUBLE	mm	-	-	0.0
out	TRANSLOC	-	DOUBLE		-	-	0.0
out	TSUMP	temperature sum from planting	DOUBLE	°C	-	-	0.0
out	TSUMend	End temperature sum	DOUBLE	°C day	-	-	0.0
out	TTANTH	Thermal time to anthesis	DOUBLE	°Cd	-	-	0.0
out	TTFLE	-	DOUBLE		-	-	0.0
out	TTMAT	Thermal time to maturity	DOUBLE	°Cd	-	-	0.0
out	TWPAW	-	DOUBLE		-	-	0.0
out	TotalWL	total water (mm) in profile	DOUBLE	mm	-	-	0.0
out	VPD	Vapor pressure deficit of the air	DOUBLE	kPa	-	-	0.0
out	WCHECK	Water balance check	DOUBLE		-	-	0.0
out	WCL	Volumetric in each soil layer	DOUBLEARRAY	cm3 H2O cm-3 soil	-	-	-
out	WL	Amount of water in soil compartments	DOUBLEARRAY	mm	-	-	-
out	WSHOOT	weight of shoot	DOUBLE	kg ha-1	-	-	0.0
out	WUperLayer	-	DOUBLEARRAY		-	-	-
out	ZRT	Root depth	DOUBLE	mm	-	-	0.0
out	sDVS	temp counter of dev, before or after anthesis	DOUBLE	one	-	-	0.0
out	sWLVD	weight of dead leaves	DOUBLE	g leaf m-2	-	-	0.0

Nested Class Summary

Nested classes/interfaces inherited from class net.simplace.sim.model.FWSimComponent

net.simplace.sim.model.FWSimComponent.TEST_STATE

Field Summary

Fields inherited from class net.simplace.sim.model.FWSimComponent

iFieldMap, iFrequence, iInputMap, iJexlRule, iMasterComponentGroup, iName, iOrderNumber, isComponentGroup, iSimComponentElement, iSimModel, iVarMap

Constructor Summary

Constructors

Constructor	Description
LintulCC_base()	Empty constructor used by class.forName()
LintulCC_base(String aName, HashMap<String,net.simplace.sim.util.FWSimVariable<?>> aFieldMap, HashMap<String,String> aInputMap, org.jdom2.Element aSimComponentElement, net.simplace.sim.util.FWSimVarMap aVarMap, int aOrderNumber)

Method Summary

Modifier and Type	Method	Description
protected net.simplace.sim.model.FWSimComponent	clone(net.simplace.sim.util.FWSimVarMap aVarMap)	creates a clone from this SimComponent for use in other threads
HashMap<String,net.simplace.sim.util.FWSimVariable<?>>	createVariables()	Create the FWSimVariables as interface for this SimComponent
HashMap<String,net.simplace.sim.util.FWSimVariable<?>>	fillTestVariables(int aParamIndex, net.simplace.sim.model.FWSimComponent.TEST_STATE aDefineOrCheck)	called for single component test to check the components algorithm.
void	init()
void	initVariables()
void	process()
protected void	resetOnHarvest()

Methods inherited from class net.simplace.sim.model.FWSimComponent

addVariable, bind, checkCondition, createSimComponent, createSimComponent, createSimComponent, createSimComponent, doProcess, getConstantVariables, getContentType, getCreateFormXML, getDescription, getEditFormXML, getFieldMap, getFrequence, getFrequenceRuleScript, getInputs, getInputVariables, getMasterComponentGroup, getName, getOrderNumber, getOutputVariables, getVariable, getVariableField, getVarMap, initialize, isConditionCheck, isVariableAvailable, performLinks, performLinks, readInputs, removeVariable, reset, runComponentTest, setVariablesDefault, toComponentLinkingXML, toDocXML, toGroupXML, toOutputDefinitionXML, toResourcesDataXML, toResourcesDefinitionXML, toString, toXML, writeVarInfos

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

LintulCC_base

public LintulCC_base(String aName,
 HashMap<String,net.simplace.sim.util.FWSimVariable<?>> aFieldMap,
 HashMap<String,String> aInputMap,
 org.jdom2.Element aSimComponentElement,
 net.simplace.sim.util.FWSimVarMap aVarMap,
 int aOrderNumber)

Parameters:

aName -

aFieldMap -

aInputMap -

aSimComponentElement -

aVarMap -

aOrderNumber -

LintulCC_base

public LintulCC_base()

Empty constructor used by class.forName()

Method Details

createVariables

public HashMap<String,net.simplace.sim.util.FWSimVariable<?>> createVariables()

Create the FWSimVariables as interface for this SimComponent

Specified by:

createVariables in interface net.simplace.sim.util.FWSimFieldContainer

Specified by:

createVariables in class net.simplace.sim.model.FWSimComponent

See Also:

• FWSimComponent.createVariables()

init

public void init()

Specified by:

init in class net.simplace.sim.model.FWSimComponent

initVariables

public void initVariables()

resetOnHarvest

protected void resetOnHarvest()

process

public void process()

Specified by:

process in class net.simplace.sim.model.FWSimComponent

fillTestVariables

public HashMap<String,net.simplace.sim.util.FWSimVariable<?>> fillTestVariables(int aParamIndex,
 net.simplace.sim.model.FWSimComponent.TEST_STATE aDefineOrCheck)

called for single component test to check the components algorithm.

Specified by:

fillTestVariables in class net.simplace.sim.model.FWSimComponent

See Also:

• net.simplace.sim.util.FWSimFieldContainer#fillTestVariables(int aParamIndex, TEST_STATE aDefineOrCheck)

clone

protected net.simplace.sim.model.FWSimComponent clone(net.simplace.sim.util.FWSimVarMap aVarMap)

creates a clone from this SimComponent for use in other threads

Specified by:

clone in class net.simplace.sim.model.FWSimComponent

See Also:

• FWSimComponent.clone(net.simplace.sim.util.FWSimVarMap)